研究概述：长锌指蛋白与人类的健康
发表论文：
1.Zuo Z*., Walker M., Petkov P., Stormo GD, Fordyce PM. On the dependent recognition of some long zinc finger proteins. Nucleic Acids Research. 2023 June 23, Volume 51, Issue 11, Pages 5364–5376
2.Zuo Z*, Roy B, YK Chang, Granas DG, Stormo GD. Measuring quantitative effects of methylation on transcription factor-DNA binding affinity. Science Advances. 2017 Nov 17
3.Zuo Z*. THE1B may have no role in human pregnancy due to ZNF430-mediated silencing. Mobile DNA. 2023, 14, article 6.
4.Zuo Z*. The successive emergence of ERVL-MaLR in primates. Virus Evolution. 2023, Volume 9, Issue 2.
5.Zuo Z*. Quantifying the arms race between LINE-1 and KRAB-zinc finger genes through TECookbook. NAR Genomics and Bioinformatics. 2023, Volume 5, Issue 3.
6.Zuo Z*, Chang YK, Stormo GD. Spec-seq: determining protein–DNA-binding specificity by sequencing. Briefings in functional genomics. 2015 Jan 1;14(1):30-8.
7.Zuo Z, Stormo GD. High-resolution specificity from DNA sequencing highlights alternative modes of Lac repressor binding. Genetics. 2014 Nov 1;198(3):1329-43.
8.Zuo Z, Chang Y, Stormo GD. A quantitative understanding of lac repressor’s binding specificity and flexibility. Quantitative biology (Beijing, China). 2015 Jun 1;3(2):69.
9.Zuo Z*. Encoding, regression, and classifications of transcription factors’ specificity and methylation effects. OBM Genetics. 2021, Volume 5, Issue 3.
10.Chang, Y. K., Zuo, Z., & Stormo, G. D.. Quantitative profiling of BATF family proteins/JUNB/IRF hetero-trimers using Spec-seq. BMC molecular biology. 2018, 19(1), 5.
11.Roy B, Zuo Z, Stormo GD. Quantitative specificity of STAT1 and several variants. Nucleic Acids Research, Volume 45, Issue 14, 21 August 2017, Pages 8199–8207
12.Chang YK, Srivastava Y, Hu C, Joyce A, Yang X, Zuo Z, Havranek JJ, Stormo GD, Jauch R. Quantitative profiling of selective Sox/POU pairing on hundreds of sequences in parallel by Coop-seq. Nucleic Acids Research. 2016 Dec 2:gkw1198.
13.Sasse SK, Zuo Z, Kadiyala V, Zhang L, Pufall MA, Jain MK, Phang TL, Stormo GD, Gerber AN. Response element composition governs correlations between binding site affinity and transcription in glucocorticoid receptor feed-forward loops. Journal of Biological Chemistry. 2015 Aug 7;290(32):19756-69.
14.Hemme CL, Fields MW, He Q, Deng Y, Lin L, Tu Q, Mouttaki H, Zhou A, Feng X, Zuo Z, Ramsay BD. Correlation of genomic and physiological traits of Thermoanaerobacter species with biofuel yields. Applied and environmental microbiology. 2011 Nov 15;77(22):7998- 8008.
15.Christensen RG, Gupta A, Zuo Z, Schriefer LA, Wolfe SA, Stormo GD. A modified bacterial one-hybrid system yields improved quantitative models of transcription factor specificity. Nucleic Acids Res. 2011 Jul;39(12)
